Bash rename multiple files5/19/2023 ![]() This gives you a bit more control using sed to generate new variable names and a single move command rather than a simple replace command. ![]() ![]() for name in *.fastq do mv "$name" "$" done.The following command will rename all files to Lib-#.ĭO NOT DO THIS TO RAW SEQUENCING FILES SUCH AS THOSE ON CORRAL Assume you have downloaded multiple fastq files which are of the format Lib-#-S#-L#-R#-001.fastq.This allows you to quickly rename files without the overhead of extra variables, but may have slightly less control? It is a good idea to make sure the command makes sense by using "echo" before actually moving things (i.e. Renaming multiple fastq files with command line variables This appears much simpler and better than messing with sed, even if you may need to do 2x one for left side, one for right side. This command works as a single line command on linux/unix, and should be entered directly into the command prompt. It could similarly be used to create backup copies of a file to play with by changing the "mv" command to a "cp" command. Ideally it is presented as a method for shortening file names by removing common elements in the name. This is an example command for renaming multiple files at once.
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